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AoD()
Use the Analysis of Distance (AoD) method to construct the biplot
AoD(<biplot> )
Calculate elements for the Analysis of Distance (AoD) biplot
CA()
Correspondence Analysis (CA) method
CA(<biplot> )
CA biplot
CLPs()
Format aesthetics for the category level points
CLRs()
Format aesthetics for the category level regions
CVA()
Perform Canonical Variate Analysis (CVA)
CVA(<biplot> )
Calculate elements for the CVA biplot
CVAlowdim()
Construct additional dimensions when the dimension of the canonical space is smaller than the dimension of the biplot
CatPCA()
Perform Categorical Principal Components Analysis (CatPCA)
CatPCA(<biplot> )
Calculate elements for the CatPCA biplot
PCA()
Perform Principal Components Analysis (PCA)
PCA(<biplot> )
Calculate elements for the PCA biplot
PCO()
Principal Coordinate Analysis (PCO) biplot method
PCO(<biplot> )
PCO biplot
alpha.bags()
Create alpha bags
axes()
Format aesthetics for the biplot axes
biplot()
First step to create a new biplot with biplotEZ
biplotEZ
biplotEZ: EZ-to-Use Biplots
classification()
Classification biplot method
classification(<biplot> )
classification biplot
classify()
Classify samples into classes
density1D()
Creates a kernel density in 1-dimension
density2D()
Create a density in 2-dimensions
ellipses()
Concentration ellipses (\(\kappa\)-ellipses)
extended.matching.coefficient()
Extended matching coefficient
fit.measures()
Compute measures of fit for the biplot.
gg_biplot()
ggplot2 plot method for biplotEZ objects
interpolate()
Interpolate supplementary points and variables to add to the biplot
legend.type()
Format the legend for the biplot
means()
Format aesthetics for the class or group means
newaxes()
Format aesthetics for the supplementary (new) biplot axes
newsamples()
Format aesthetics for the supplementary (new) biplot samples
nom.axes()
Format aesthetics for the nominal biplot axes
ord.axes()
Format aesthetics for the ordinal biplot axes
plot(<biplot> )
Generic Plotting function of objects of class biplot
plot(<gg_biplot> )
plot() on a gg_biplot re-displays the ggplot
`+`(<gg_biplot> )
+ composes with ggplot components and returns a plain ggplot, so bp |> gg_biplot() + labs(...) still works.
prediction()
Predict samples to display on the biplot
print(<biplot> )
Generic print function for objects of class biplot
print(<gg_biplot> )
Printing a gg_biplot displays the stored ggplot, then (as base print.biplot does) reports any predictions - here with the actual predicted values, which base leaves to be read off the axes.
reflect()
Reflect the biplot about a chosen axis
regress()
Regression biplot method
regress(<biplot> )
Regression biplot
rotate()
Rotate the biplot a chosen amount of degrees
samples()
Format aesthetics for the biplot samples
sqrtManhattan()
Computes the square root of the Manhattan distance An example of a Euclidean embeddable distance metric
summary(<biplot> )
Generic summary function for objects of class biplot
ties()
Applies primary or secondary approach to ties
translate_axes()
Translate biplot axes
